PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18418g03002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 226aa    MW: 25060.3 Da    PI: 6.3603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18418g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12163208655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR +i +++ +L++l+P+     +k  + a++L  Av+YIk+L+
  Niben101Scf18418g03002.1 163 SIAERVRRTKISDRMRRLQDLVPNM----DKQTNTADMLDFAVDYIKELE 208
                               689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-12161212No hitNo description
Gene3DG3DSA:4.10.280.102.4E-15162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQLTEYGAMR GVGSYRTGAN ATTDTSLSTP KRFKTQVGIS SGKPPASPGL MTPISEIGDK  60
VVEENSIGDE HKNDESCITD FPIPSWEDSH ILSDDFLKAE DIEIEPFSNV NTSNVQNSEG  120
LSRPPIPLSH HLSLPTSTLE KLLQDSTPLN VRAKRGCATH PRSIAERVRR TKISDRMRRL  180
QDLVPNMDKQ TNTADMLDFA VDYIKELEKQ VKILAEKCSK CTCTNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793126.11e-154PREDICTED: uncharacterized protein LOC104240039 isoform X1
RefseqXP_016451818.11e-154PREDICTED: uncharacterized protein LOC107776436
TrEMBLM1BZU01e-137M1BZU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000567161e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-40bHLH family protein